PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_868_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 242aa    MW: 26162.8 Da    PI: 8.1604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_868_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.2e-272101197
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C+++Cvl+p++     p++q +++ +v+k+FG++ ++++++a+p+++   +++sl++eA+ r+ +Pv+Gavg++++++++++q+++
  Neem_868_f_1   2 SCNGCRVLRKGCSESCVLRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPDSQ--PLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAV 96 
                   6****************************************************99876..69**********************************9 PP

        DUF260  93 elall 97 
                   e++l+
  Neem_868_f_1  97 ETVLR 101
                   98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.0111105IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-23299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPDSQP  60
LFQSLLFEAC GRTVNPVNGA VGLLWTGNWH VCQAAVETVL RGGTLRPMTD LLNGGAGSSA  120
AASDEASEAE VTCTEIWKLQ DRPLPSSHCR FSSSRSKVSA GKRKKVVETE PAIKLQQSDL  180
DLCLTPNFST RVVLPCKPEI RRRPGTPSMN SEESVTTTCF DSGSGDQYFN GGQGRRLLNL  240
FV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466482.11e-131PREDICTED: LOB domain-containing protein 38
SwissprotQ9SN236e-89LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A067GGX21e-131A0A067GGX2_CITSI; Uncharacterized protein
STRINGPOPTR_0005s18900.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-80LOB domain-containing protein 37